SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_164000565
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: colon
Biosample name: HCT116_Nut0h_BR1 DMSO
Genomic region: chr16:23536088-23561491
Size: 25403
Super-enhancer rank 565
Number of SE elements: 7
ChIP density(Case|Control): 17769.3985|2230.3834
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: EARS2 ;
ROSE Overlap UBFD1 ; EARS2 ;
ROSE Proximal GGA2 ; NDUFAB1 ; EARS2 ;
ROSE Closest EARS2 ;
Lasso NDUFAB1 ; PLK1 ; ERN2 ; UBFD1 ; EARS2 ;
PreSTIGE ;
ABC UBFD1 ; EARS2 ; GGA2 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_164000565 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers