SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_164000424
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: colon
Biosample name: HCT116_Nut0h_BR1 DMSO
Genomic region: chr3:57574554-57599402
Size: 24848
Super-enhancer rank 424
Number of SE elements: 4
ChIP density(Case|Control): 20924.5008|2686.0688
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: ARF4 ;
ROSE Overlap ARF4 ; ARF4-AS1 ;
ROSE Proximal ARF4-AS1 ; DNAH12 ; PDE12 ;
ROSE Closest ARF4 ;
Lasso ARF4 ; PDE12 ;
PreSTIGE ;
ABC ARF4 ; ARF4-AS1 ; PDE12 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_164000424 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers