SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_164000225
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: colon
Biosample name: HCT116_Nut0h_BR1 DMSO
Genomic region: chr3:129159401-129185360
Size: 25959
Super-enhancer rank 225
Number of SE elements: 5
ChIP density(Case|Control): 27031.1067|2826.9351
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: ISY1-RAB43 ;
ROSE Overlap ISY1 ; ISY1-RAB43 ; CNBP ;
ROSE Proximal RAB43 ; CNBP ;
ROSE Closest ISY1 ;
Lasso CNBP ; RAB43 ; HMCES ; KIAA1257 ;
PreSTIGE ;
ABC MBD4 ; IFT122 ; EFCAB12 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_164000225 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers