SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_164000181
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: colon
Biosample name: HCT116_Nut0h_BR1 DMSO
Genomic region: chr7:27163354-27174679
Size: 11325
Super-enhancer rank 181
Number of SE elements: 1
ChIP density(Case|Control): 27925.185|1242.3525
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: HOXA10-AS ;
ROSE Overlap MIR196B ; HOXA10 ; HOXA10-HOXA9 ; HOXA10-AS ; HOXA9 ;
ROSE Proximal HOXA11 ; HOXA-AS3 ; HOTTIP ; HOXA-AS2 ; HOXA7 ; HOXA3 ; HOXA5 ; HOXA4 ; HOXA13 ; HOXA6 ; HOXA11-AS ;
ROSE Closest HOXA10-AS ;
Lasso ;
PreSTIGE ;
ABC HOXA3 ; HOXA4 ; HOTAIRM1 ; HOXA1 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_164000181 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers