SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_164000120
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: colon
Biosample name: HCT116_Nut0h_BR1 DMSO
Genomic region: chr19:1406874-1446313
Size: 39439
Super-enhancer rank 120
Number of SE elements: 10
ChIP density(Case|Control): 35341.2879|3143.2883
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: RPS15 ;
ROSE Overlap RPS15 ; DAZAP1 ;
ROSE Proximal GAMT ; NDUFS7 ; APC2 ; PCSK4 ; REEP6 ; C19orf25 ;
ROSE Closest RPS15 ;
Lasso PCSK4 ; APC2 ; NDUFS7 ; GAMT ; MIDN ; CIRBP ; C19orf25 ;
PreSTIGE ;
ABC DAZAP1 ; RPS15 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_164000120 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers