SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_164000080
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: colon
Biosample name: HCT116_Nut0h_BR1 DMSO
Genomic region: chr19:38822890-38853683
Size: 30793
Super-enhancer rank 80
Number of SE elements: 9
ChIP density(Case|Control): 40840.7559|2842.1939
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: ECH1 ;
ROSE Overlap HNRNPL ; ECH1 ;
ROSE Proximal NFKBIB ; SIRT2 ; LGALS7B ; RINL ; LGALS4 ; LGALS7 ;
ROSE Closest ECH1 ;
Lasso CAPN12 ; LGALS7B ; LGALS4 ; RINL ;
PreSTIGE ;
ABC CATSPERG ; DPF1 ; YIF1B ; KCNK6 ; PSMD8 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_164000080 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers