SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_164000011
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: colon
Biosample name: HCT116_Nut0h_BR1 DMSO
Genomic region: chr10:112460372-112549470
Size: 89098
Super-enhancer rank 11
Number of SE elements: 16
ChIP density(Case|Control): 88679.2394|16732.6044
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: VTI1A ;
ROSE Overlap VTI1A ;
ROSE Proximal ZDHHC6 ;
ROSE Closest VTI1A ;
Lasso VTI1A ; ZDHHC6 ;
PreSTIGE ;
ABC RPL13AP6 ; SHOC2 ; BBIP1 ; PDCD4 ; PDCD4-AS1 ; RBM20 ; SMNDC1 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_164000011 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers