SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_162801002
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Hydrothorax
Biosample name: K562 knockout silencer1 and 2 regions DKO
Genomic region: chr9:35913507-35925482
Size: 11975
Super-enhancer rank 1002
Number of SE elements: 4
ChIP density(Case|Control): 6894.0075|1517.2325
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: LINC00961 ;
ROSE Overlap ;
ROSE Proximal LINC00961 ; OR13J1 ; OR2S2 ; HRCT1 ;
ROSE Closest LINC00961 ;
Lasso ;
PreSTIGE ;
ABC FAM221B ; TMEM8B ; HRCT1 ; RECK ; MELK ; RNF38 ; GNE ; CLTA ; CCIN ; GLIPR2 ; HINT2 ; FAM166B ; CD72 ; LOC101926948 ; CCDC107 ; ARHGEF39 ; CA9 ; TPM2 ; TESK1 ; SPAG8 ; MSMP ; RGP1 ; GBA2 ; TLN1 ; CREB3 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_162801002 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers