SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_162800371
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Hydrothorax
Biosample name: K562 knockout silencer1 and 2 regions DKO
Genomic region: chr12:54277966-54283807
Size: 5841
Super-enhancer rank 371
Number of SE elements: 1
ChIP density(Case|Control): 10311.7014|967.2696
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: HNRNPA1 ;
ROSE Overlap CBX5 ; HNRNPA1 ;
ROSE Proximal COPZ1 ; CBX5 ; NFE2 ; MIR3198-2 ;
ROSE Closest HNRNPA1 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_162800371 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers