SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_162800144
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Hydrothorax
Biosample name: K562 knockout silencer1 and 2 regions DKO
Genomic region: chr3:9395295-9423555
Size: 28260
Super-enhancer rank 144
Number of SE elements: 5
ChIP density(Case|Control): 19547.442|5632.218
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: SETD5 ;
ROSE Overlap SETD5 ; THUMPD3-AS1 ;
ROSE Proximal THUMPD3 ; SETD5 ;
ROSE Closest SETD5 ;
Lasso ;
PreSTIGE ;
ABC THUMPD3 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_162800144 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers