SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_162600085
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Hydrothorax
Biosample name: K562 knockout silencer1 region S1KO
Genomic region: chr19:18284814-18327452
Size: 42638
Super-enhancer rank 85
Number of SE elements: 11
ChIP density(Case|Control): 40715.0262|10902.5366
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: LSM4 ;
ROSE Overlap LSM4 ;
ROSE Proximal PDE4C ; JUND ; PGPEP1 ; LOC729966 ; MIR3188 ; KIAA1683 ;
ROSE Closest LSM4 ;
Lasso PIK3R2 ; IFI30 ; ISYNA1 ; PDE4C ; RAB3A ; JUND ; PGPEP1 ; LSM4 ; GDF15 ; ARRDC2 ;
PreSTIGE ;
ABC MPV17L2 ; RAB3A ; LOC102725254 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_162600085 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers