SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_162600054
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Hydrothorax
Biosample name: K562 knockout silencer1 region S1KO
Genomic region: chr11:65400225-65430507
Size: 30282
Super-enhancer rank 54
Number of SE elements: 7
ChIP density(Case|Control): 43742.349|6777.1116
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: NEAT1 ;
ROSE Overlap NEAT1 ; FRMD8 ;
ROSE Proximal SLC25A45 ; FRMD8 ; MIR612 ; TIGD3 ;
ROSE Closest NEAT1 ;
Lasso MAP3K11 ; EHBP1L1 ; DPF2 ; TIGD3 ; PCNXL3 ; LTBP3 ; FRMD8 ; CDC42EP2 ; SSSCA1 ; SLC25A45 ; FAM89B ; SIPA1 ; SCYL1 ; POLA2 ;
PreSTIGE ;
ABC SIPA1 ; RELA ; KAT5 ; MAP3K11 ; PCNX3 ;
BETA ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_162600054 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers