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Super-enhancer overview

SE ID: SE_02_156001472
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Gastrointestinal Stromal
Biosample name: GIST-9_PDGFRA e18
Genomic region: chr17:48482792-48523528
Size: 40736
Super-enhancer rank 1472
Number of SE elements: 12
ChIP density(Case|Control): 13618.0448|5034.9696
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: HOXB-AS1 ;
ROSE Overlap ;
ROSE Proximal LOC101927166 ; HOXB-AS1 ; HOXB1 ; HOXB2 ;
ROSE Closest HOXB1 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA HOXB3 ; LOC101927166 ; HOXB-AS3 ; HOXB-AS1 ; HOXB5 ; MIR10A ; SKAP1 ; HOXB4 ; HOXB2 ; HOXB1 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_156001472 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers