SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_156001457
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Gastrointestinal Stromal
Biosample name: GIST-9_PDGFRA e18
Genomic region: chr5:6703295-6724005
Size: 20710
Super-enhancer rank 1457
Number of SE elements: 5
ChIP density(Case|Control): 10858.253|2193.189
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: PAPD7 ;
ROSE Overlap LOC100505625 ; PAPD7 ;
ROSE Proximal PAPD7 ;
ROSE Closest PAPD7 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA PAPD7 ; NSUN2 ; LOC100505625 ; SRD5A1 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_156001457 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers