SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_156001377
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Gastrointestinal Stromal
Biosample name: GIST-9_PDGFRA e18
Genomic region: chr12:5042973-5061577
Size: 18604
Super-enhancer rank 1377
Number of SE elements: 7
ChIP density(Case|Control): 11264.722|2234.3404
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: KCNA5 ;
ROSE Overlap KCNA5 ;
ROSE Proximal ;
ROSE Closest KCNA5 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA KCNA5 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_156001377 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers