SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_156001342
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Gastrointestinal Stromal
Biosample name: GIST-9_PDGFRA e18
Genomic region: chr1:19196091-19241833
Size: 45742
Super-enhancer rank 1342
Number of SE elements: 9
ChIP density(Case|Control): 14866.15|5662.8596
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: UBR4 ;
ROSE Overlap UBR4 ; EMC1 ;
ROSE Proximal MRTO4 ; AKR7L ; AKR7A3 ; EMC1 ;
ROSE Closest UBR4 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA PQLC2 ; EMC1 ; MRTO4 ; UBR4 ; LOC100506730 ; AKR7L ; AKR7A2 ; AKR7A3 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_156001342 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers