SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_156001296
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Gastrointestinal Stromal
Biosample name: GIST-9_PDGFRA e18
Genomic region: chr13:49996986-50011807
Size: 14821
Super-enhancer rank 1296
Number of SE elements: 6
ChIP density(Case|Control): 11659.6807|2252.792
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: TRIM13 ;
ROSE Overlap TRIM13 ; DLEU2 ;
ROSE Proximal MIR16-1 ; KCNRG ; MIR15A ; MIR3613 ;
ROSE Closest TRIM13 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA SPRYD7 ; KCNRG ; MIR16-1 ; TRIM13 ; MIR15A ; DLEU1 ; MIR3613 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_156001296 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers