SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_156001251
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Gastrointestinal Stromal
Biosample name: GIST-9_PDGFRA e18
Genomic region: chr13:24265451-24276046
Size: 10595
Super-enhancer rank 1251
Number of SE elements: 3
ChIP density(Case|Control): 11312.2815|1699.438
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: SPATA13 ;
ROSE Overlap SPATA13 ;
ROSE Proximal C1QTNF9 ; SPATA13-AS1 ;
ROSE Closest SPATA13 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA SPATA13-AS1 ; C1QTNF9 ; SPATA13 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_156001251 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers