SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_156001142
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Gastrointestinal Stromal
Biosample name: GIST-9_PDGFRA e18
Genomic region: chr12:6923871-6930687
Size: 6816
Super-enhancer rank 1142
Number of SE elements: 1
ChIP density(Case|Control): 11255.2608|959.0112
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: ATN1 ;
ROSE Overlap ATN1 ;
ROSE Proximal PTPN6 ; MIR141 ; ENO2 ; MIR200C ; SCARNA12 ; PHB2 ; RNU7-1 ; C12orf57 ; LRRC23 ; DSTNP2 ; EMG1 ; RPL13P5 ;
ROSE Closest ATN1 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA PTPN6 ; C12orf57 ; CDCA3 ; MIR141 ; LPCAT3 ; TPI1 ; GNB3 ; ENO2 ; USP5 ; MIR200C ; ATN1 ; P3H3 ; EMG1 ; RNU7-1 ; SPSB2 ; PHB2 ; SCARNA12 ; LRRC23 ; DSTNP2 ; RPL13P5 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_156001142 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers