SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_156001007
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Gastrointestinal Stromal
Biosample name: GIST-9_PDGFRA e18
Genomic region: chr17:7881334-7890524
Size: 9190
Super-enhancer rank 1007
Number of SE elements: 1
ChIP density(Case|Control): 12109.663|1119.342
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: CHD3 ;
ROSE Overlap CHD3 ;
ROSE Proximal CYB5D1 ; CNTROB ; TMEM88 ; SCARNA21 ; LOC284023 ; KDM6B ; TRAPPC1 ; NAA38 ; KCNAB3 ;
ROSE Closest CHD3 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA TMEM88 ; CHD3 ; TRAPPC1 ; CNTROB ; LOC284023 ; SCARNA21 ; NAA38 ; KDM6B ; CYB5D1 ; KCNAB3 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_156001007 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers