SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_156000493
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Gastrointestinal Stromal
Biosample name: GIST-9_PDGFRA e18
Genomic region: chr7:131096515-131112257
Size: 15742
Super-enhancer rank 493
Number of SE elements: 3
ChIP density(Case|Control): 18742.4252|2202.3058
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: LINC-PINT ;
ROSE Overlap LINC-PINT ; MKLN1 ;
ROSE Proximal LINC-PINT ;
ROSE Closest LINC-PINT ;
Lasso ;
PreSTIGE ;
ABC ;
BETA LINC-PINT ; MKLN1 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_156000493 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers