SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_156000426
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Gastrointestinal Stromal
Biosample name: GIST-9_PDGFRA e18
Genomic region: chr5:135973909-136037318
Size: 63409
Super-enhancer rank 426
Number of SE elements: 20
ChIP density(Case|Control): 26143.5307|8369.988
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: TGFBI ;
ROSE Overlap TGFBI ;
ROSE Proximal FBXL21 ; VTRNA2-1 ; LECT2 ;
ROSE Closest TGFBI ;
Lasso ;
PreSTIGE ;
ABC ;
BETA LECT2 ; VTRNA2-1 ; FBXL21 ; TGFBI ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_156000426 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers