SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_156000407
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Gastrointestinal Stromal
Biosample name: GIST-9_PDGFRA e18
Genomic region: chr7:130914540-131012881
Size: 98341
Super-enhancer rank 407
Number of SE elements: 22
ChIP density(Case|Control): 32059.166|13846.4128
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: LOC100506860 ;
ROSE Overlap LOC100506860 ; LINC-PINT ;
ROSE Proximal MIR29A ; LINC-PINT ; MIR29B1 ;
ROSE Closest LOC100506860 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA MIR29B1 ; LOC100506860 ; MIR29A ; LINC-PINT ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_156000407 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers