SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_156000301
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Gastrointestinal Stromal
Biosample name: GIST-9_PDGFRA e18
Genomic region: chr4:76179527-76219936
Size: 40409
Super-enhancer rank 301
Number of SE elements: 12
ChIP density(Case|Control): 25756.6966|5329.9471
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: SCARB2 ;
ROSE Overlap SCARB2 ; FAM47E ;
ROSE Proximal FAM47E-STBD1 ; NUP54 ;
ROSE Closest SCARB2 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA SCARB2 ; NUP54 ; FAM47E-STBD1 ; FAM47E ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_156000301 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers