SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_156000201
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Gastrointestinal Stromal
Biosample name: GIST-9_PDGFRA e18
Genomic region: chr5:170329996-170379933
Size: 49937
Super-enhancer rank 201
Number of SE elements: 9
ChIP density(Case|Control): 30556.4503|6257.1061
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: KCNIP1 ;
ROSE Overlap LINC01366 ; KCNMB1 ; KCNIP1 ;
ROSE Proximal LINC01366 ; CTD-2270F17.1 ; LCP2 ;
ROSE Closest KCNIP1 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA KCNMB1 ; LINC01366 ; CTD-2270F17.1 ; LCP2 ; KCNIP1 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_156000201 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers