SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_156000071
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Gastrointestinal Stromal
Biosample name: GIST-9_PDGFRA e18
Genomic region: chr17:48540863-48561138
Size: 20275
Super-enhancer rank 71
Number of SE elements: 1
ChIP density(Case|Control): 41845.5725|2548.5675
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: HOXB2 ;
ROSE Overlap HOXB3 ; HOXB2 ; HOXB-AS1 ;
ROSE Proximal HOXB-AS3 ; HOXB1 ; MIR10A ; HOXB6 ; HOXB4 ; HOXB5 ; HOXB7 ;
ROSE Closest HOXB2 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA HOXB3 ; HOXB-AS3 ; HOXB-AS1 ; HOXB5 ; MIR196A1 ; HOXB9 ; MIR10A ; HOXB8 ; HOXB7 ; HOXB6 ; HOXB4 ; HOXB2 ; HOXB1 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_156000071 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers