SEdb 2.0
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Super-enhancer overview

SE ID: SE_02_143500534
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Stem cell
Tissue type: Trophoblast
Biosample name: trophoblast stem cells_MSX2_KD
Genomic region: chr9:131666894-131679722
Size: 12828
Super-enhancer rank 534
Number of SE elements: 3
ChIP density(Case|Control): 12840.828|1685.5992
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: RAPGEF1;
ROSE Overlap RAPGEF1;
ROSE Proximal ;
ROSE Closest RAPGEF1;
Lasso ;
PreSTIGE ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_143500534 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
GREAT Download bed

Overlap with other super-enhancers