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Super-enhancer overview

SE ID: SE_02_143500516
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Stem cell
Tissue type: Trophoblast
Biosample name: trophoblast stem cells_MSX2_KD
Genomic region: chr1:155104931-155130959
Size: 26028
Super-enhancer rank 516
Number of SE elements: 9
ChIP density(Case|Control): 14666.778|3370.626
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: EFNA1;
ROSE Overlap EFNA1;
ROSE Proximal EFNA1; KRTCAP2; TRIM46; SLC50A1; EFNA4; EFNA3; DPM3; LOC100505666;
ROSE Closest EFNA1;
Lasso ;
PreSTIGE ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_143500516 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
GREAT Download bed

Overlap with other super-enhancers