SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_132000646
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Connective Tissue
Biosample name: HT1080_EWS-FLI1
Genomic region: chr6:34235834-34241103
Size: 5269
Super-enhancer rank 646
Number of SE elements: 1
ChIP density(Case|Control): 28808.7844|642.818
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: HMGA1 ;
ROSE Overlap MIR6835 ; HMGA1 ;
ROSE Proximal HMGA1 ; C6orf1 ;
ROSE Closest HMGA1 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA GRM4 ; HMGA1 ; C6orf1 ; MIR6835 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_132000646 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers