SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_122901080
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Haematopoietic and lymphoid tissue bone marrow
Biosample name: K562_Control
Genomic region: chr19:907534-915905
Size: 8371
Super-enhancer rank 1080
Number of SE elements: 1
ChIP density(Case|Control): 16043.0215|1068.9767
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: R3HDM4 ;
ROSE Overlap R3HDM4 ;
ROSE Proximal CFD ; ARID3A ; KISS1R ; MED16 ;
ROSE Closest R3HDM4 ;
Lasso ;
PreSTIGE ;
ABC KISS1R ; R3HDM4 ; MED16 ;
BETA RNU6-7 ; ELANE ; RNU6-1 ; KISS1R ; RNU6-2 ; MIR3187 ; ARID3A ; AZU1 ; RNU6-8 ; GRIN3B ; MED16 ; LPPR3 ; WDR18 ; RNU6-9 ; PRTN3 ; CFD ; R3HDM4 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_122901080 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers