SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_122900608
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Haematopoietic and lymphoid tissue bone marrow
Biosample name: K562_Control
Genomic region: chr19:3664688-3719199
Size: 54511
Super-enhancer rank 608
Number of SE elements: 22
ChIP density(Case|Control): 28105.8716|6917.4459
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: PIP5K1C ;
ROSE Overlap PIP5K1C ; TJP3 ;
ROSE Proximal TJP3 ; MRPL54 ; PIP5K1C ; APBA3 ; CACTIN ;
ROSE Closest PIP5K1C ;
Lasso TBXA2R ; APBA3 ; TJP3 ; CACTIN ; PIP5K1C ;
PreSTIGE ;
ABC PIP5K1C ; TJP3 ;
BETA RAX2 ; TBXA2R ; CACTIN ; TJP3 ; PIP5K1C ; APBA3 ; MRPL54 ; MATK ; CACTIN-AS1 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_122900608 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers