SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_122301041
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Bone marrow
Biosample name: KMS28BM
Genomic region: chrX:153967209-153974746
Size: 7537
Super-enhancer rank 1041
Number of SE elements: 1
ChIP density(Case|Control): 16675.6125|837.3607
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: HCFC1 ;
ROSE Overlap HCFC1 ; TMEM187 ; HCFC1-AS1 ;
ROSE Proximal MIR3202-1 ; NAA10 ; IRAK1 ; ARHGAP4 ; MIR718 ; MIR3202-2 ; RENBP ;
ROSE Closest HCFC1 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA AVPR2 ; IRAK1 ; L1CAM ; ARHGAP4 ; RENBP ; LCA10 ; MIR718 ; NAA10 ; TMEM187 ; HCFC1 ; MIR3202-2 ; MIR3202-1 ; HCFC1-AS1 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_122301041 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers