SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_122000521
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Bone marrow
Biosample name: JJN3
Genomic region: chr10:17226805-17232896
Size: 6091
Super-enhancer rank 521
Number of SE elements: 3
ChIP density(Case|Control): 24818.3886|1230.382
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: VIM-AS1 ;
ROSE Overlap VIM-AS1 ; VIM ;
ROSE Proximal TRDMT1 ;
ROSE Closest VIM-AS1 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA VIM-AS1 ; VIM ; TRDMT1 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_122000521 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers