SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_122000413
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Bone marrow
Biosample name: JJN3
Genomic region: chr12:57831271-57847067
Size: 15796
Super-enhancer rank 413
Number of SE elements: 11
ChIP density(Case|Control): 29026.7296|2058.2188
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: CTDSP2 ;
ROSE Overlap CTDSP2 ;
ROSE Proximal TSFM ; MIR26A2 ; AVIL ;
ROSE Closest CTDSP2 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA METTL1 ; CYP27B1 ; AGAP2 ; METTL21B ; TSFM ; LOC100506844 ; CTDSP2 ; TSPAN31 ; MARCH9 ; AVIL ; MIR6759 ; MIR26A2 ; CDK4 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_122000413 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers