SEdb 3.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_118500715
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Tissue
Tissue type: Brain
Biosample name: GBM14
Genomic region: chr3:12139341-12160798
Size: 21457
Super-enhancer rank 715
Number of SE elements: 7
ChIP density(Case|Control): 22731.5458|1892.5074
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: TIMP4 ;
ROSE Overlap TIMP4 ; SYN2 ;
ROSE Proximal ;
ROSE Closest TIMP4 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA TIMP4 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_118500715 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
Download bed

Overlap with other super-enhancers