SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_118500701
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Tissue
Tissue type: Brain
Biosample name: GBM14
Genomic region: chr5:140568436-140614939
Size: 46503
Super-enhancer rank 701
Number of SE elements: 17
ChIP density(Case|Control): 24274.566|3264.5106
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: APBB3 ;
ROSE Overlap SLC35A4 ;
ROSE Proximal SRA1 ; EIF4EBP3 ; TMCO6 ; MIR3655 ; CD14 ; IK ; MIR6831 ; NDUFA2 ; APBB3 ; WDR55 ;
ROSE Closest APBB3 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA EIF4EBP3 ; NDUFA2 ; SRA1 ; TMCO6 ; APBB3 ; MIR3655 ; CD14 ; HARS2 ; WDR55 ; IK ; DND1 ; MIR6831 ; SLC35A4 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_118500701 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers