SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_113000372
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Haematopoietic and lymphoid tissue bone marrow
Biosample name: K562_Np63_expressing
Genomic region: chr12:49225745-49268765
Size: 43020
Super-enhancer rank 372
Number of SE elements: 7
ChIP density(Case|Control): 38907.288|6237.9
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: TUBA1C ;
ROSE Overlap TUBA1C ;
ROSE Proximal TUBA1A ; PRPH ;
ROSE Closest TUBA1C ;
Lasso TUBA1B ; TROAP ; DHH ; TUBA1A ; TUBA1C ; DDN ;
PreSTIGE ;
ABC DDX23 ; CCDC65 ; RND1 ; WNT10B ; ARF3 ; CACNB3 ; WNT1 ; DDN ;
BETA TROAP ; C1QL4 ; TUBA1A ; TUBA1C ; DNAJC22 ; LOC101927267 ; PRPH ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_113000372 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers