SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_109900358
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Haematopoietic and lymphoid tissue bone marrow
Biosample name: K562_DMSO_noIFNG
Genomic region: chr12:6609582-6654211
Size: 44629
Super-enhancer rank 358
Number of SE elements: 14
ChIP density(Case|Control): 38929.8767|5395.6461
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: LPAR5 ;
ROSE Overlap ACRBP ; LPAR5 ; ING4 ;
ROSE Proximal CHD4 ; ZNF384 ; SCARNA11 ; PIANP ; NOP2 ;
ROSE Closest LPAR5 ;
Lasso NCAPD2 ; MLF2 ; GAPDH ; NOP2 ; CHD4 ; ACRBP ; COPS7A ; ING4 ; ZNF384 ; LPAR5 ;
PreSTIGE ;
ABC NCAPD2 ; NOP2 ; GAPDH ; MRPL51 ; VAMP1 ; TAPBPL ; CD27-AS1 ;
BETA IFFO1 ; LPAR5 ; COPS7A ; GAPDH ; NOP2 ; ZNF384 ; SCARNA11 ; CHD4 ; ACRBP ; ING4 ; PIANP ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_109900358 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers