SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_109100437
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Mammary gland
Biosample name: T47D_shCtrl_shRING1B_8hr
Genomic region: chr12:49058114-49061462
Size: 3348
Super-enhancer rank 437
Number of SE elements: 2
ChIP density(Case|Control): 12809.448|429.8832
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: KMT2D ;
ROSE Overlap ;
ROSE Proximal DHH ; LMBR1L ; PRKAG1 ; RHEBL1 ; KMT2D ;
ROSE Closest KMT2D ;
Lasso ;
PreSTIGE ;
ABC ;
BETA PRKAG1 ; RHEBL1 ; LMBR1L ; DHH ; TUBA1B ; KMT2D ; DDN ; WNT1 ; WNT10B ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_109100437 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers