SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_109100424
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Mammary gland
Biosample name: T47D_shCtrl_shRING1B_8hr
Genomic region: chr16:2211974-2229600
Size: 17626
Super-enhancer rank 424
Number of SE elements: 6
ChIP density(Case|Control): 14418.068|1831.3414
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: E4F1 ;
ROSE Overlap E4F1 ; PGP ;
ROSE Proximal CASKIN1 ; MLST8 ; ECI1 ; DNASE1L2 ; MIR3677 ; BRICD5 ; RNPS1 ; MIR4717 ; MIR940 ; E4F1 ;
ROSE Closest E4F1 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA MIR3677 ; RNPS1 ; ECI1 ; BRICD5 ; MIR4717 ; MLST8 ; DNASE1L2 ; E4F1 ; PGP ; PKD1 ; SNORD60 ; MIR3180-5 ; TRAF7 ; CASKIN1 ; RAB26 ; MIR940 ; MIR4516 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_109100424 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers