SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_109100385
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Mammary gland
Biosample name: T47D_shCtrl_shRING1B_8hr
Genomic region: chr17:40442699-40450114
Size: 7415
Super-enhancer rank 385
Number of SE elements: 4
ChIP density(Case|Control): 14336.161|922.426
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: IGFBP4 ;
ROSE Overlap IGFBP4 ;
ROSE Proximal TOP2A ;
ROSE Closest IGFBP4 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA TNS4 ; TOP2A ; IGFBP4 ; GJD3 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_109100385 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers