SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_109100299
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Mammary gland
Biosample name: T47D_shCtrl_shRING1B_8hr
Genomic region: chr16:585684-594282
Size: 8598
Super-enhancer rank 299
Number of SE elements: 2
ChIP density(Case|Control): 16573.5048|805.6326
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: RAB40C ;
ROSE Overlap RAB40C ;
ROSE Proximal NHLRC4 ; WFIKKN1 ; C16orf13 ; PRR35 ; FAM195A ; PIGQ ; RAB40C ; MIR3176 ;
ROSE Closest RAB40C ;
Lasso ;
PreSTIGE ;
ABC ;
BETA C16orf13 ; CAPN15 ; RAB40C ; LINC00235 ; MIR3176 ; STUB1 ; PIGQ ; NHLRC4 ; MIR5587 ; WFIKKN1 ; RHBDL1 ; RHOT2 ; JMJD8 ; FAM195A ; PRR35 ; WDR90 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_109100299 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers