SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_109100153
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Mammary gland
Biosample name: T47D_shCtrl_shRING1B_8hr
Genomic region: chr3:186782448-186786528
Size: 4080
Super-enhancer rank 153
Number of SE elements: 1
ChIP density(Case|Control): 24358.416|1065.288
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: SNORD2 ;
ROSE Overlap EIF4A2 ; SNORD2 ;
ROSE Proximal LOC102724699 ; SNORA63 ; RFC4 ; SNORA4 ; SNORA81 ; MIR1248 ;
ROSE Closest SNORD2 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA EIF4A2 ; SNORD2 ; SNORA81 ; KNG1 ; ADIPOQ ; LOC102724699 ; SNORA4 ; RFC4 ; ADIPOQ-AS1 ; MIR1248 ; SNORA63 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_109100153 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers