SEdb 2.0
  1. Search
  2. Super-enhancer search result
  3. Super-enhancer detail

Super-enhancer overview

SE ID: SE_02_109100152
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Mammary gland
Biosample name: T47D_shCtrl_shRING1B_8hr
Genomic region: chr12:53985151-53992735
Size: 7584
Super-enhancer rank 152
Number of SE elements: 1
ChIP density(Case|Control): 24553.2|1086.0288
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: MIR196A2;
ROSE Overlap MIR196A2; HOXC-AS3; HOXC10;
ROSE Proximal HOXC12; HOTAIR; HOXC4; HOXC11; HOXC-AS2; HOXC13; HOXC9; HOXC6; HOXC8; HOXC-AS1; HOXC13-AS; HOXC5; MIR615;
ROSE Closest MIR196A2;
Lasso ;
PreSTIGE ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_109100152 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
GREAT Download bed

Overlap with other super-enhancers