SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_108800192
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Mammary gland
Biosample name: T47D_shCtrl_45min
Genomic region: chr17:28739043-28751249
Size: 12206
Super-enhancer rank 192
Number of SE elements: 6
ChIP density(Case|Control): 52012.2072|1414.6754
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: TRAF4 ;
ROSE Overlap TRAF4 ; NEK8 ;
ROSE Proximal SNORD4B ; RAB34 ; TLCD1 ; PROCA1 ; SNORD42A ; SNORD4A ; SNORD42B ; RPL23A ;
ROSE Closest TRAF4 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA PROCA1 ; TRAF4 ; SNORD42A ; KIAA0100 ; NEK8 ; RAB34 ; FAM222B ; SNORD4B ; SNORD4A ; SDF2 ; RPL23A ; SNORD42B ; TLCD1 ; NARR ; SUPT6H ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_108800192 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers