SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_098800655
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Blood
Biosample name: K562_EPZ
Genomic region: chr1:16498303-16520785
Size: 22482
Super-enhancer rank 655
Number of SE elements: 5
ChIP density(Case|Control): 18758.9808|5501.3454
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: RNU1-1 ;
ROSE Overlap RNVU1-18 ;
ROSE Proximal RNU1-1 ; CROCCP3 ; MIR3675 ; FAM231B ;
ROSE Closest RNVU1-18 ;
Lasso FBXO42 ; SZRD1 ; SPEN ; NECAP2 ; FAM131C ; SPATA21 ; C1orf134 ;
PreSTIGE ;
ABC ;
BETA SPATA21 ; NECAP2 ; RNVU1-18 ; RNU1-3 ; CROCCP3 ; RNU1-28P ; RNU1-4 ; RNU1-27P ; RNU1-1 ; RNU1-2 ; MIR3675 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_098800655 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers