SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_098800617
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Cell line
Tissue type: Blood
Biosample name: K562_EPZ
Genomic region: chr3:46491183-46511703
Size: 20520
Super-enhancer rank 617
Number of SE elements: 12
ChIP density(Case|Control): 15968.664|2365.956
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: RTP3 ;
ROSE Overlap RTP3 ;
ROSE Proximal LRRC2-AS1 ; LTF ;
ROSE Closest RTP3 ;
Lasso CCRL2 ; RTP3 ;
PreSTIGE ;
ABC ;
BETA LRRC2 ; LOC102724297 ; TDGF1 ; CCRL2 ; LRRC2-AS1 ; RTP3 ; LTF ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_098800617 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers