SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_092900845
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Primary cell
Tissue type: Mid-gestation placenta
Biosample name: trophoblast__CytT
Genomic region: chr1:154935744-154939892
Size: 4148
Super-enhancer rank 845
Number of SE elements: 2
ChIP density(Case|Control): 14884.2684|393.2304
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: PMVK ;
ROSE Overlap PMVK ;
ROSE Proximal CKS1B ; PBXIP1 ; SHC1 ; PYGO2 ; MIR4258 ; FLAD1 ;
ROSE Closest PMVK ;
Lasso ;
PreSTIGE ;
ABC ;
BETA FLAD1 ; SHC1 ; KCNN3 ; DCST1 ; DCST2 ; CKS1B ; PYGO2 ; ZBTB7B ; PMVK ; MIR4258 ; LENEP ; PBXIP1 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_092900845 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers