SEdb 3.0
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Super-enhancer overview

SE ID: SE_02_092900720
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Primary cell
Tissue type: Mid-gestation placenta
Biosample name: trophoblast__CytT
Genomic region: chr3:54859520-54905308
Size: 45788
Super-enhancer rank 720
Number of SE elements: 20
ChIP density(Case|Control): 20558.812|4519.2756
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: CACNA2D3-AS1 ;
ROSE Overlap CACNA2D3-AS1 ; CACNA2D3 ;
ROSE Proximal LRTM1 ;
ROSE Closest CACNA2D3-AS1 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA LRTM1 ; CACNA2D3-AS1 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_092900720 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers