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Super-enhancer overview

SE ID: SE_02_092900621
Species: Human
Data source: NCBI GEO/SRA
Biosample type: Primary cell
Tissue type: Mid-gestation placenta
Biosample name: trophoblast__CytT
Genomic region: chr1:27862390-27892034
Size: 29644
Super-enhancer rank 621
Number of SE elements: 18
ChIP density(Case|Control): 20347.6416|2940.6848
Genome browser:
Super-enhancer associated network

Super-enhancer annotation

1~5
5~10
10~MAX

Super-enhancer associated genes

Strategies/Algorithm Gene name
The closest active: THEMIS2 ;
ROSE Overlap RPA2 ; THEMIS2 ;
ROSE Proximal SCARNA1 ; PPP1R8 ; SMPDL3B ; THEMIS2 ;
ROSE Closest THEMIS2 ;
Lasso ;
PreSTIGE ;
ABC ;
BETA RPA2 ; SMPDL3B ; PPP1R8 ; SCARNA1 ; THEMIS2 ; XKR8 ;

Network diagram of super-enhancer and associated genes

Expression of SE_02_092900621 associated genes

Cell line (ENCODE) Primary cell (ENCODE) Normal tissue (GTEx) Cell line (CCLE) Cancer (TCGA)

TF/TcoF/CR Binding to Super-enhancer


Super-enhancer element (H3K27ac)

1~5
5~10
10~MAX
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Overlap with other super-enhancers